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Nebula Genomics (30x Whole Genome Sequencing)

Salento said:
@Jovialis
If you compare the Nebula coordinates vs 23andme, Ancestry, LivDNA, … Which is the closest and the farthest from Nebula?
Click to expand...

Ancestry gives you the most coverage out of those, 23andme, and LivingDNA are tied for the least. The bulk of the Superkit came from what Ancestry provided.
 
My Y-haplogroup according to what WGSextract found by analyzing the WGS BAM:

R1b1a1b2a2a
 
Jovialis said:
Ancestry gives you the most coverage out of those, 23andme, and LivingDNA are tied for the least. The bulk of the Superkit came from what Ancestry provided.
Click to expand...

thanks :) … so for those without a combined Kit, their best coordinates and results might be through AncestryDNA.
 
@Salento

Indeed, Ancestry is probably the best mainstream genotyping consumer genomics company to obtain your raw data.

Here is my updated Dodecad distance results for Nebula:

[TABLE="class: distances"]
[TR]
[TH="align: right"]Distance to:[/TH]
[TH="align: left"]Nebula[/TH]
[/TR]
[TR]
[TD="bgcolor: #40FF00, align: right"]1.88010638[/TD]
[TD]Italian_Abruzzo[/TD]
[/TR]
[TR]
[TD="bgcolor: #83FF00, align: right"]3.84724577[/TD]
[TD]Italian_Apulia[/TD]
[/TR]
[TR]
[TD="bgcolor: #A9FF00, align: right"]4.96997988[/TD]
[TD]Italian_Lazio[/TD]
[/TR]
[TR]
[TD="bgcolor: #ADFF00, align: right"]5.09004912[/TD]
[TD]Greek_Central[/TD]
[/TR]
[TR]
[TD="bgcolor: #AFFF00, align: right"]5.15633591[/TD]
[TD]Italian_Campania[/TD]
[/TR]
[TR]
[TD="bgcolor: #B3FF00, align: right"]5.26680017[/TD]
[TD]Italian_Marche[/TD]
[/TR]
[TR]
[TD="bgcolor: #B6FF00, align: right"]5.36386987[/TD]
[TD]Greek_Lemnos[/TD]
[/TR]
[TR]
[TD="bgcolor: #B7FF00, align: right"]5.37535115[/TD]
[TD]Italian_Sicily[/TD]
[/TR]
[TR]
[TD="bgcolor: #C0FF00, align: right"]5.65294613[/TD]
[TD]Greek_Athens[/TD]
[/TR]
[TR]
[TD="bgcolor: #D2FF00, align: right"]6.17855970[/TD]
[TD]Greek_Foca[/TD]
[/TR]
[TR]
[TD="bgcolor: #EAFF00, align: right"]6.88314608[/TD]
[TD]Greek_Peloponnese[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFF100, align: right"]7.89715772[/TD]
[TD]Albanian[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFE600, align: right"]8.24733896[/TD]
[TD]Italian_Calabria[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFE400, align: right"]8.28775000[/TD]
[TD]Ashkenazi_Jews[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFE400, align: right"]8.29598698[/TD]
[TD]Greek_Thrace[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFDF00, align: right"]8.44739605[/TD]
[TD]Moldovan_Jewish[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFDD00, align: right"]8.50125873[/TD]
[TD]Italian_Romagna[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFD600, align: right"]8.71546327[/TD]
[TD]Greek_Izmir[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFD200, align: right"]8.82405236[/TD]
[TD]Greek_Thessaly[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFC600, align: right"]9.18807379[/TD]
[TD]Greek_Thessaloniki[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFBF00, align: right"]9.36855378[/TD]
[TD]Greek_Fournoi[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF9A00, align: right"]10.46934095[/TD]
[TD]Bulgarian_Thrace[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF9900, align: right"]10.49634698[/TD]
[TD]Greek_Crete[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF8100, align: right"]11.21442821[/TD]
[TD]Albanian_Kosovo[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF7600, align: right"]11.52890715[/TD]
[TD]Italian_Tuscany

[/TD]
[/TR]
[/TABLE]
 
Here is the original spread sheet for Dodecad:

[TABLE="class: distances"]
[TR]
[TH="align: right"]Distance to:[/TH]
[TH="align: left"]Nebula[/TH]
[/TR]
[TR]
[TD="bgcolor: #E7FF00, align: right"]6.80801733[/TD]
[TD]C_Italian[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFEE00, align: right"]8.00835813[/TD]
[TD]O_Italian[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFE500, align: right"]8.25956415[/TD]
[TD]S_Italian_Sicilian[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFDF00, align: right"]8.44261216[/TD]
[TD]Sicilian[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFDB00, align: right"]8.54508046[/TD]
[TD]Greek[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF9A00, align: right"]10.47327074[/TD]
[TD]Tuscan[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF7F00, align: right"]11.26364506[/TD]
[TD]Ashkenazy_Jews[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF7D00, align: right"]11.32732978[/TD]
[TD]Ashkenazi[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF7B00, align: right"]11.38397119[/TD]
[TD]TSI30[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF0002, align: right"]15.05379022[/TD]
[TD]Sephardic_Jews[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF0037, align: right"]16.61730423[/TD]
[TD]Morocco_Jews[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF004C, align: right"]17.22097558[/TD]
[TD]N_Italian[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF0087, align: right"]18.95840974[/TD]
[TD]North_Italian[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF009D, align: right"]19.61347496[/TD]
[TD]Bulgarian[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF00AD, align: right"]20.07642897[/TD]
[TD]Bulgarians[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF00CB, align: right"]20.96617276[/TD]
[TD]Romanians[/TD]
[/TR]
[TR]
[TD="bgcolor: #C500FF, align: right"]24.20628844[/TD]
[TD]Turkish[/TD]
[/TR]
[TR]
[TD="bgcolor: #B100FF, align: right"]24.79345881[/TD]
[TD]Cypriots[/TD]
[/TR]
[TR]
[TD="bgcolor: #7000FF, align: right"]26.70302230[/TD]
[TD]Turks[/TD]
[/TR]
[TR]
[TD="bgcolor: #4800FF, align: right"]27.86819693[/TD]
[TD]Lebanese[/TD]
[/TR]
[TR]
[TD="bgcolor: #4400FF, align: right"]27.99393506[/TD]
[TD]Baleares[/TD]
[/TR]
[TR]
[TD="bgcolor: #1600FF, align: right"]29.34935093[/TD]
[TD]Canarias[/TD]
[/TR]
[TR]
[TD="bgcolor: #1500FF, align: right"]29.39324072[/TD]
[TD]Galicia[/TD]
[/TR]
[TR]
[TD="bgcolor: #0F00FF, align: right"]29.55520935[/TD]
[TD]Extremadura[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]30.00664093[/TD]
[TD]Portuguese

[/TD]
[/TR]
[/TABLE]
 
Dodecad Globe 13 results:

[TABLE="class: distances"]
[TR]
[TH="align: right"]Distance to:[/TH]
[TH="align: left"]Jovialis:Nebula[/TH]
[/TR]
[TR]
[TD="bgcolor: #5AFF00, align: right"]2.65588027[/TD]
[TD]Greek_D[/TD]
[/TR]
[TR]
[TD="bgcolor: #AAFF00, align: right"]5.00656569[/TD]
[TD]C_Italian_D[/TD]
[/TR]
[TR]
[TD="bgcolor: #DEFF00, align: right"]6.51534343[/TD]
[TD]Sicilian_D[/TD]
[/TR]
[TR]
[TD="bgcolor: #DEFF00, align: right"]6.52577198[/TD]
[TD]S_Italian_Sicilian_D[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFEC00, align: right"]8.05553847[/TD]
[TD]Ashkenazi_D[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFE000, align: right"]8.41972090[/TD]
[TD]Ashkenazy_Jews[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFBE00, align: right"]9.42187349[/TD]
[TD]Tuscan[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFA700, align: right"]10.08532102[/TD]
[TD]TSI30[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF9800, align: right"]10.53649372[/TD]
[TD]O_Italian_D[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF0014, align: right"]15.58511149[/TD]
[TD]Sephardic_Jews[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF002E, align: right"]16.36177558[/TD]
[TD]Morocco_Jews[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF0030, align: right"]16.40602633[/TD]
[TD]N_Italian_D[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF0044, align: right"]16.99122421[/TD]
[TD]North_Italian[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF007E, align: right"]18.69148737[/TD]
[TD]Turkish_Aydin_Ho[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF008B, align: right"]19.07945754[/TD]
[TD]Bulgarians_Y[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF009D, align: right"]19.62166405[/TD]
[TD]Bulgarian_D[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF00E3, align: right"]21.68662491[/TD]
[TD]Romanians[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF00EA, align: right"]21.86878369[/TD]
[TD]Turkish_Cypriot_D[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF00EE, align: right"]22.01239878[/TD]
[TD]Cypriots[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF00F9, align: right"]22.31622056[/TD]
[TD]Canarias_1KG[/TD]
[/TR]
[TR]
[TD="bgcolor: #E400FF, align: right"]23.28513904[/TD]
[TD]Murcia_1KG[/TD]
[/TR]
[TR]
[TD="bgcolor: #E000FF, align: right"]23.41955807[/TD]
[TD]Baleares_1KG[/TD]
[/TR]
[TR]
[TD="bgcolor: #C900FF, align: right"]24.10248327[/TD]
[TD]Portuguese_D[/TD]
[/TR]
[TR]
[TD="bgcolor: #BE00FF, align: right"]24.42338429[/TD]
[TD]Turkish_D[/TD]
[/TR]
[TR]
[TD="bgcolor: #BC00FF, align: right"]24.46135115[/TD]
[TD]Extremadura_1KG

[/TD]
[/TR]
[/TABLE]
 
Ancient Rome Test in Dodecad G13

[TABLE="class: distances"]
[TR]
[TH="align: right"]Distance to:[/TH]
[TH="align: left"]Jovialis:Nebula[/TH]
[/TR]
[TR]
[TD="bgcolor: #3EFF00, align: right"]1.80922635[/TD]
[TD]C6:Imperial_Mediterranean:R835:Civitanova_Marche[/TD]
[/TR]
[TR]
[TD="bgcolor: #5CFF00, align: right"]2.69957404[/TD]
[TD]C6:Late_Antiquity_Mediterranean:R118:S_Ercolano_Necropolis_Ostia[/TD]
[/TR]
[TR]
[TD="bgcolor: #62FF00, align: right"]2.89001730[/TD]
[TD]C6:Medieval_Mediterranean:R970:Tivoli_Palazzo_Cianti[/TD]
[/TR]
[TR]
[TD="bgcolor: #64FF00, align: right"]2.93651154[/TD]
[TD]C6:Medieval_Mediterranean:R57:Villa_Magna[/TD]
[/TR]
[TR]
[TD="bgcolor: #6AFF00, align: right"]3.12512400[/TD]
[TD]C6:Imperial_Mediterranean:R836:Civitanova_Marche[/TD]
[/TR]
[TR]
[TD="bgcolor: #6DFF00, align: right"]3.21353388[/TD]
[TD]C6:Medieval_Mediterranean:R969:Tivoli_Palazzo_Cianti[/TD]
[/TR]
[TR]
[TD="bgcolor: #71FF00, align: right"]3.32625916[/TD]
[TD]C6:Medieval_Mediterranean:R1290:Villa_Magna[/TD]
[/TR]
[TR]
[TD="bgcolor: #74FF00, align: right"]3.41651870[/TD]
[TD]C6:Medieval_Mediterranean:R52:Villa_Magna[/TD]
[/TR]
[TR]
[TD="bgcolor: #77FF00, align: right"]3.48716217[/TD]
[TD]C6:Medieval_Mediterranean:R59:Villa_Magna[/TD]
[/TR]
[TR]
[TD="bgcolor: #81FF00, align: right"]3.79902619[/TD]
[TD]C6:Late_Antiquity_Mediterranean:R121:S_Ercolano_Necropolis_Ostia[/TD]
[/TR]
[TR]
[TD="bgcolor: #89FF00, align: right"]4.02554344[/TD]
[TD]C6:Imperial_Mediterranean:R131:Via_Paisiello_Necropolis[/TD]
[/TR]
[TR]
[TD="bgcolor: #8AFF00, align: right"]4.06814454[/TD]
[TD]C6:Imperial_Mediterranean:R49:Centocelle_Necropolis[/TD]
[/TR]
[TR]
[TD="bgcolor: #98FF00, align: right"]4.47909589[/TD]
[TD]C6:Medieval_Mediterranean:R60:Villa_Magna[/TD]
[/TR]
[TR]
[TD="bgcolor: #9BFF00, align: right"]4.57123616[/TD]
[TD]C6:Medieval_Mediterranean:R973:Tivoli_Palazzo_Cianti[/TD]
[/TR]
[TR]
[TD="bgcolor: #A1FF00, align: right"]4.74308971[/TD]
[TD]C5:Late_Antiquity_Eastern_Mediterranean:R122:S_Ercolano_Necropolis_Ostia[/TD]
[/TR]
[TR]
[TD="bgcolor: #A2FF00, align: right"]4.77853534[/TD]
[TD]C6:Medieval_Mediterranean:R58:Villa_Magna[/TD]
[/TR]
[TR]
[TD="bgcolor: #A4FF00, align: right"]4.83627956[/TD]
[TD]C6:Medieval_Mediterranean:R64:Villa_Magna[/TD]
[/TR]
[TR]
[TD="bgcolor: #A5FF00, align: right"]4.86082298[/TD]
[TD]C6:Medieval_Mediterranean:R54:Villa_Magna[/TD]
[/TR]
[TR]
[TD="bgcolor: #A9FF00, align: right"]4.95681349[/TD]
[TD]C5:Late_Antiquity_Eastern_Mediterranean:R32:Mausole_di_Augusto[/TD]
[/TR]
[TR]
[TD="bgcolor: #B7FF00, align: right"]5.38665945[/TD]
[TD]C6:Late_Antiquity_Mediterranean:R107:Crypta_Balbi[/TD]
[/TR]
[TR]
[TD="bgcolor: #BCFF00, align: right"]5.53368774[/TD]
[TD]C6:Medieval_Mediterranean:R56:Villa_Magna[/TD]
[/TR]
[TR]
[TD="bgcolor: #BDFF00, align: right"]5.54973873[/TD]
[TD]C6:Late_Antiquity_Mediterranean:R36:Celio[/TD]
[/TR]
[TR]
[TD="bgcolor: #BFFF00, align: right"]5.62045372[/TD]
[TD]C6:Imperial_Mediterranean:R1549:Monterotondo[/TD]
[/TR]
[TR]
[TD="bgcolor: #BFFF00, align: right"]5.62926283[/TD]
[TD]C6:Late_Antiquity_Mediterranean:R117:S_Ercolano_Necropolis_Ostia[/TD]
[/TR]
[TR]
[TD="bgcolor: #C4FF00, align: right"]5.77807927[/TD]
[TD]C6:Medieval_Mediterranean:R1283:Cancelleria

[/TD]
[/TR]
[/TABLE]
 
With the dietary health snips alone I was very tempted, but it also seems your calculator results had a huge improvement? (or am I missunderstanding, seems like your distances decreased).

I could only dream of 1.6 diatance atm. but that might have to do with my autosomal mix. Wonder if anything would drop me below 4 for averaged pops, and 2.5 for single tab.

Does the 30x ever go on sale?
 
Salento said:
thanks :) … so for those without a combined Kit, their best coordinates and results might be through AncestryDNA.
Click to expand...

Jovialis: Thanks for sharing your Nebula information. So that is lots of SNPS, I assume your Super Kit is a combined Ancestry, 23 and something else. and you still almost have 1 million more SNPs.

Salento: I agree with what you are suggesting based on Jovialis results, Ancestry is the best results for me as well. They just have so many more reference populations than any other Company that I have seen and read about.
 
Archetype0ne said:
With the dietary health snips alone I was very tempted, but it also seems your calculator results had a huge improvement? (or am I missunderstanding, seems like your distances decreased).

I could only dream of 1.6 diatance atm. but that might have to do with my autosomal mix. Wonder if anything would drop me below 4 for averaged pops, and 2.5 for single tab.

Does the 30x ever go on sale?
Click to expand...

I think they do go on sale every now and then, you should check around holidays like Christmas.

Ancestry is pretty sufficient for high accuracy for raw data. But if you want total accuracy, I would go with a 30x Genome sequencing service. Nebula for the most part has been pretty good in terms of service. Though I did have to follow up with them to make sure they're on top of it. Overall, I'd give them 4 out of 5 stars, because the process took longer than expected. Nevertheless, they give you good files to work with.

The CRAM was of particular value to me, because I turned it into a BAM with WGSextract beta 3, which I then turned into a combined raw data file, providing 99.99% genotype coverage.
 
Despite having 99th percentile testosterone levels, and apparently 100th percentile for psychosis :petrified:; I am saved by the fact that I have a large brain volume. I also know for a fact that I have a high IQ due to testing as a child. Because if I were low IQ with a smaller brain, I'd likely be a criminal, in prison:

WbUU0tu.jpg


moZ1NAh.jpg


sqgvagW.jpg


S3MxHiA.jpg


V78rNG0.jpg
 
Jovialis said:
I think they do go on sale every now and then, you should check around holidays like Christmas.

Ancestry is pretty sufficient for high accuracy for raw data. But if you want total accuracy, I would go with a 30x Genome sequencing service. Nebula for the most part has been pretty good in terms of service. Though I did have to follow up with them to make sure they're on top of it. Overall, I'd give them 4 out of 5 stars, because the process took longer than expected. Nevertheless, they give you good files to work with.

The CRAM was of particular value to me, because I turned it into a BAM with WGSextract beta 3, which I then turned into a combined raw data file, providing 99.99% genotype coverage.
Click to expand...

Jovialis: So the Nebula Genomics test you did. Do you get a file similar to say Ancestry, etc that you can easily download and then run in GEDMATCH or Admixture studio, etc.? That 99.9% coverage you are referring to, that is doing the Nebula Genomics test? or is that 99.8% the 1 million or so SNPs you got from Nebula plus the other approximately 1 million from your Ancestry+23/Me+ I assume NATGENO, etc?

Thanks for sharing some your results, really interesting.
 
Very interesting.

Say I get Ancestry, can I run it through Nebula to get those reports?

Those reports look lit!!!
 
@PT

My superkit was a combination of 23andme V5, Ancestry DNA, Living DNA, Helix geno 2.0, and FTDNA.

[TABLE="width: 622"]
[TR]
[TD]Filename[/TD]
[TD]Calculator[/TD]
[TD]Genotype ratio[/TD]
[/TR]
[TR]
[TD]Nebula Genomics[/TD]
[TD]Dodecad K12b[/TD]
[TD="align: right"]99.99%[/TD]
[/TR]
[TR]
[TD]Superkit[/TD]
[TD]Dodecad K12b[/TD]
[TD="align: right"]94.64%[/TD]
[/TR]
[TR]
[TD]AncestryDNA[/TD]
[TD]Dodecad K12b[/TD]
[TD="align: right"]91.20%[/TD]
[/TR]
[TR]
[TD]Nat Geo Helix 2.0[/TD]
[TD]Dodecad K12b[/TD]
[TD="align: right"]43.58%[/TD]
[/TR]
[TR]
[TD]FTDNA[/TD]
[TD]Dodecad K12b[/TD]
[TD="align: right"]40.00%[/TD]
[/TR]
[TR]
[TD]Living DNA[/TD]
[TD]Dodecad K12b[/TD]
[TD="align: right"]28.19%[/TD]
[/TR]
[TR]
[TD]23andme_V5[/TD]
[TD]Dodecad K12b[/TD]
[TD="align: right"]28.09%[/TD]
[/TR]
[/TABLE]

UWDjxP9.png
 
Archetype0ne said:
Very interesting.

Say I get Ancestry, can I run it through Nebula to get those reports?

Those reports look lit!!!
Click to expand...

If you're particularly interested in the reports, I'd go with the 30x nebula test. Ancestry, while sufficient for looking at ancestry, would give you limited or skewed reports. Also, there is an annoying issue with e-mails if you upload raw data. If you want to test with nebula, use a different e-mail than the one you used to upload the raw data.
 
Jovialis said:
@PT

My superkit was a combination of 23andme V5, Ancestry DNA, Living DNA, Helix geno 2.0, and FTDNA.

[TABLE="width: 622"]
[TR]
[TD]Filename[/TD]
[TD]Calculator[/TD]
[TD]Genotype ratio[/TD]
[/TR]
[TR]
[TD]Nebula Genomics[/TD]
[TD]Dodecad K12b[/TD]
[TD="align: right"]99.99%[/TD]
[/TR]
[TR]
[TD]Superkit[/TD]
[TD]Dodecad K12b[/TD]
[TD="align: right"]94.64%[/TD]
[/TR]
[TR]
[TD]AncestryDNA[/TD]
[TD]Dodecad K12b[/TD]
[TD="align: right"]91.20%[/TD]
[/TR]
[TR]
[TD]Nat Geo Helix 2.0[/TD]
[TD]Dodecad K12b[/TD]
[TD="align: right"]43.58%[/TD]
[/TR]
[TR]
[TD]FTDNA[/TD]
[TD]Dodecad K12b[/TD]
[TD="align: right"]40.00%[/TD]
[/TR]
[TR]
[TD]Living DNA[/TD]
[TD]Dodecad K12b[/TD]
[TD="align: right"]28.19%[/TD]
[/TR]
[TR]
[TD]23andme_V5[/TD]
[TD]Dodecad K12b[/TD]
[TD="align: right"]28.09%[/TD]
[/TR]
[/TABLE]

UWDjxP9.png
Click to expand...

I think because the genotype coverage was so low, the imputation decided to lump me in with a more predominate genotype for Southern Italians, which is why 23andme and living DNA puts me between Abruzzo, Campania, and Sicily. Nevertheless, the higher genotype coverage shows that there is a fairly significant shift from that.
 
Jovialis: Thanks for the information in post #41. Wow so Ancestry really does provide more genotype coverage vs. the other ones you have used. I can see that your Superkit and Nebula plots you between Apulia, Lazio and Abruzzo similar to where your Ancestry DNA file plots you. Nice little Natural experiment you ran there. I think I may do that as well.

Thanks again for the PCA plot with all your various Files

PT
 
Jovialis: Thanks again for that PCA plot. I used my 3 files, Ancestry, 23ME and NATGENO and combined Ancestry_23ME and plotted them vs. the Dodecad 12B updated Modern Italian populations. All of them are in the same neighborhood but Ancestry individually gives me the closest Distances vs. 23_ME and NATGENO and my Combined Ancestry/23ME tightens up the estimates among Sicily, Campania and Abruzzo. NATGENO has me a little more Western shifted I think due to NATGENO assigning me a large WEST_MED component (14%, 2nd behind the Italian_Southern Europe of 71%), which they consider (Sardinia, Corsica and NW Italy to Southern France and Iberia) part of.

Again thanks for that PCA plot of yours, as when I did mine the way you presented it, really provides a nice picture

FbNqWsG.jpg



[TABLE="class: distances"]
[TR]
[TH="align: right"]Distance to:[/TH]
[TH="align: left"]PalermoTrapani_ANCESTRY[/TH]
[/TR]
[TR]
[TD="bgcolor: #79FF00, align: right"]3.55695094[/TD]
[TD]Italian_Campania[/TD]
[/TR]
[TR]
[TD="bgcolor: #82FF00, align: right"]3.83109645[/TD]
[TD]Italian_Abruzzo[/TD]
[/TR]
[TR]
[TD="bgcolor: #89FF00, align: right"]4.03399306[/TD]
[TD]Italian_Sicily[/TD]
[/TR]
[TR]
[TD="bgcolor: #C7FF00, align: right"]5.85703850[/TD]
[TD]Italian_Calabria[/TD]
[/TR]
[TR]
[TD="bgcolor: #D6FF00, align: right"]6.29590343[/TD]
[TD]Italian_Apulia[/TD]
[/TR]
[TR]
[TD="bgcolor: #DCFF00, align: right"]6.47651913[/TD]
[TD]Ashkenazi_Jews[/TD]
[/TR]
[TR]
[TD="bgcolor: #EFFF00, align: right"]7.04365275[/TD]
[TD]Italian_Marche[/TD]
[/TR]
[TR]
[TD="bgcolor: #F4FF00, align: right"]7.18862991[/TD]
[TD]Moldovan_Jewish[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFFA00, align: right"]7.65706210[/TD]
[TD]Italian_Lazio[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFF100, align: right"]7.90179726[/TD]
[TD]Greek_Lemnos[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFCE00, align: right"]8.92854971[/TD]
[TD]Italian_Jews[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFCB00, align: right"]9.03374230[/TD]
[TD]Greek_Foca[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFCB00, align: right"]9.04327927[/TD]
[TD]Greek_Athens[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFCA00, align: right"]9.04979005[/TD]
[TD]Greek_Central[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFC000, align: right"]9.35666073[/TD]
[TD]Greek_Fournoi

[/TD]
[/TR]
[/TABLE]

[TABLE="class: distances"]
[TR]
[TH="align: right"]Distance to:[/TH]
[TH="align: left"]PalermoTrapani_NATGENO[/TH]
[/TR]
[TR]
[TD="bgcolor: #C5FF00, align: right"]5.80251670[/TD]
[TD]Italian_Campania[/TD]
[/TR]
[TR]
[TD="bgcolor: #C6FF00, align: right"]5.81831591[/TD]
[TD]Italian_Abruzzo[/TD]
[/TR]
[TR]
[TD="bgcolor: #D5FF00, align: right"]6.25112790[/TD]
[TD]Italian_Sicily[/TD]
[/TR]
[TR]
[TD="bgcolor: #EFFF00, align: right"]7.02488890[/TD]
[TD]Italian_Marche[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFF600, align: right"]7.77297240[/TD]
[TD]Italian_Lazio[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFF600, align: right"]7.77398225[/TD]
[TD]Italian_Calabria[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFEF00, align: right"]7.96713248[/TD]
[TD]Ashkenazi_Jews[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFE800, align: right"]8.17665580[/TD]
[TD]Italian_Apulia[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFD700, align: right"]8.68283940[/TD]
[TD]Moldovan_Jewish[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFAD00, align: right"]9.90486244[/TD]
[TD]Greek_Lemnos[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFAD00, align: right"]9.91812986[/TD]
[TD]Italian_Jews[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFAA00, align: right"]10.00520864[/TD]
[TD]Italian_Romagna[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFA100, align: right"]10.27486253[/TD]
[TD]Greek_Athens[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF9F00, align: right"]10.32988867[/TD]
[TD]Greek_Central[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF8F00, align: right"]10.78454450[/TD]
[TD]Greek_Foca

[/TD]
[/TR]
[/TABLE]

[TABLE="class: distances"]
[TR]
[TH="align: right"]Distance to:[/TH]
[TH="align: left"]PalermoTrapani23_ME[/TH]
[/TR]
[TR]
[TD="bgcolor: #B6FF00, align: right"]5.36401902[/TD]
[TD]Italian_Abruzzo[/TD]
[/TR]
[TR]
[TD="bgcolor: #BEFF00, align: right"]5.60141946[/TD]
[TD]Italian_Sicily[/TD]
[/TR]
[TR]
[TD="bgcolor: #C3FF00, align: right"]5.74162869[/TD]
[TD]Italian_Campania[/TD]
[/TR]
[TR]
[TD="bgcolor: #F1FF00, align: right"]7.07688943[/TD]
[TD]Italian_Marche[/TD]
[/TR]
[TR]
[TD="bgcolor: #F2FF00, align: right"]7.10671513[/TD]
[TD]Italian_Apulia[/TD]
[/TR]
[TR]
[TD="bgcolor: #FEFF00, align: right"]7.46454285[/TD]
[TD]Italian_Lazio[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFFB00, align: right"]7.60805494[/TD]
[TD]Ashkenazi_Jews[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFFB00, align: right"]7.63214911[/TD]
[TD]Italian_Calabria[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFEC00, align: right"]8.06370882[/TD]
[TD]Moldovan_Jewish[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFD500, align: right"]8.74444967[/TD]
[TD]Greek_Lemnos[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFBD00, align: right"]9.43181319[/TD]
[TD]Greek_Central[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFB900, align: right"]9.55031413[/TD]
[TD]Greek_Athens[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFAC00, align: right"]9.94718051[/TD]
[TD]Italian_Jews[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFAA00, align: right"]9.99860490[/TD]
[TD]Greek_Foca[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFA600, align: right"]10.12975321[/TD]
[TD]Italian_Romagna

[/TD]
[/TR]
[/TABLE]
[TABLE="class: distances"]
[TR]
[TH="align: right"]Distance to:[/TH]
[TH="align: left"]PalermoTrapani_ANCESTRY_23ME[/TH]
[/TR]
[TR]
[TD="bgcolor: #79FF00, align: right"]3.56992997[/TD]
[TD]Italian_Campania[/TD]
[/TR]
[TR]
[TD="bgcolor: #80FF00, align: right"]3.77608263[/TD]
[TD]Italian_Abruzzo[/TD]
[/TR]
[TR]
[TD="bgcolor: #87FF00, align: right"]3.98449495[/TD]
[TD]Italian_Sicily[/TD]
[/TR]
[TR]
[TD="bgcolor: #C7FF00, align: right"]5.86301970[/TD]
[TD]Italian_Calabria[/TD]
[/TR]
[TR]
[TD="bgcolor: #D4FF00, align: right"]6.23848539[/TD]
[TD]Italian_Apulia[/TD]
[/TR]
[TR]
[TD="bgcolor: #DBFF00, align: right"]6.45569516[/TD]
[TD]Ashkenazi_Jews[/TD]
[/TR]
[TR]
[TD="bgcolor: #EEFF00, align: right"]7.01391360[/TD]
[TD]Italian_Marche[/TD]
[/TR]
[TR]
[TD="bgcolor: #F3FF00, align: right"]7.14076326[/TD]
[TD]Moldovan_Jewish[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFFB00, align: right"]7.60876468[/TD]
[TD]Italian_Lazio[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFF300, align: right"]7.86122764[/TD]
[TD]Greek_Lemnos[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFCE00, align: right"]8.94503773[/TD]
[TD]Italian_Jews[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFCC00, align: right"]8.98608925[/TD]
[TD]Greek_Foca[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFCC00, align: right"]8.98801424[/TD]
[TD]Greek_Athens[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFCC00, align: right"]8.99696616[/TD]
[TD]Greek_Central[/TD]
[/TR]
[TR]
[TD="bgcolor: #FFC100, align: right"]9.33669106[/TD]
[TD]Greek_Fournoi

[/TD]
[/TR]
[/TABLE]
 
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